species:   Rhsol
pid:       PID0581
parent:    Rhi-milR-21
paralog:   
locus:     KB317742.1:112670-112782
matures:   ['AGCGAGGUAGAACAAGUAAGUCC', 'UCUUGCAUUUGCCUUGGAAA']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317742.1:112670-112782

2 out of bounds
97 alignments
75 proper strand
45 stranded perfect matches

          ************************                                 ***************************                   
UAAAAAGAAUUUCUCUUGCAUUUGCCUUGGAAAAGAGGUCUUUUGUAUUUAAUGGACUUCAUAACCCGAUAGCGAGGUAGAACAAGUAAGUCCAUAGUUUUUUUUAACACCUG
(((((((((((...(((((.(((((((((.....(((((((.(((....))).)))))))............)))))))))....))))).....))))))))))).......
----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCC-------------------- l=23 a=1 c
-------------UCUUGCAUUUGCCUUGGAAA-------------------------------------------------------------------------------- l=20 a=0 c*
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCCA------------------- l=25 a=16 ma
------------CUCUUGCAUUUGCCUUGGAAAA------------------------------------------------------------------------------- l=22 a=0 ma*

------------------------------------------------------------------------CGAGGUAGAACAAGUAAGUCC-------------------- l=21 a=1 
------------------------------------------------------------------------CGAGGUAGAACAAGUAAGUCCAUAG---------------- l=25 a=1 
----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCa-------------------- l=23 a=2 
----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCC-------------------- l=23 a=1 (c)
----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCCA------------------- l=24 a=2 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAA------------------------ l=20 a=1 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAG----------------------- l=21 a=1 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGU---------------------- l=22 a=4 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUC--------------------- l=23 a=5 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUu--------------------- l=23 a=1 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCa-------------------- l=24 a=23 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCC-------------------- l=24 a=4 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCg-------------------- l=24 a=2 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCCA------------------- l=25 a=16 (ma)
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCCc------------------- l=25 a=1 
--------------------------------------------------------------------AUAGCGAGGUAGAACAAGUAAG----------------------- l=22 a=3 
--------------------------------------------------------------------cUAGCGAGGUAGAACAAGUAAGUC--------------------- l=24 a=1 
------------------------------------------------------------------CGAUAGCGAGGUAGAACAAGUA------------------------- l=22 a=1 
------------------------------------------------------------------CGAUAGCGAGGUAGAACAAGUAAGUCCA------------------- l=28 a=1 
-------------------------------------------------------------UAACCCGAUAGCGAGGUAGAACAAGUAAG----------------------- l=29 a=3 
-------------------------------------------------UAAUGGACUUCAUAACCCGAUAGCGAG------------------------------------- l=27 a=1 

mb-01010
ax-1001001
ku-01
ss-101010101000
fn-101
